| 19. Round | 16/02/2025 | FK Pelister | - | FK AP Brera Strumica | 0:0 | ||||
| 20. Round | 23/02/2025 | GFK Tikvesh | - | FK Pelister | 1:2 | ||||
| 24. Round | 15/03/2025 | KF Shkupi | - | FK Pelister | 0:1 |  |
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| 26. Round | 05/04/2025 | FC Struga | - | FK Pelister | 4:1 | ||||
| 27. Round | 13/04/2025 | FK Pelister | - | FK AP Brera Strumica | 1:2 | ||||
| 28. Round | 19/04/2025 | FK Rabotnički | - | FK Pelister | 2:1 | ||||
| 29. Round | 27/04/2025 | FK Pelister | - | GFK Tikvesh | 1:0 |  |
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| 32. Round | 11/05/2025 | Sileks Kratovo | - | FK Pelister | 0:0 |
Russia