| 1. HNL | Matches | W | D | L |  |
 |
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| home | 6 | 1 | - | 5 | 16 | - | - |
| away | 7 | - | 1 | 6 | 13 | - | - |
| overall | 13 | 1 | 1 | 11 | 29 | - | - |
| 1. HNL | Home | - | Guest | |
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Results |
| 04/12/99 | HNK Cibalia | - | HNK Šibenik | 2 | - | - | 3:0 |
| 26/02/00 | HNK Šibenik | - | NK Istra Pula | 1 | - | - | 0:1 |
| 11/03/00 | HNK Šibenik | - | NK Osijek | 3 | - | - | 0:2 |
| 20/08/00 | HNK Šibenik | - | NK Zagreb | 4 | - | - | 1:3 |
| 03/08/02 | NK Zadar | - | HNK Šibenik | 2 | - | - | 0:0 |
| 15/03/03 | Dinamo Zagreb | - | HNK Šibenik | - | - | - | 3:1 |
| 05/05/07 | Dinamo Zagreb | - | HNK Šibenik | 3 | - | - | 3:0 |
| 20/10/07 | HNK Šibenik | - | Dinamo Zagreb | 2 | - | - | 0:2 |
| 24/08/08 | NK Varaždin | - | HNK Šibenik | 2 | - | - | 2:1 |
| 09/11/08 | HNK Šibenik | - | HNK Cibalia | 3 | - | - | 4:0 |
| 07/12/08 | HNK Šibenik | - | Hajduk Split | 3 | - | - | 1:2 |
| 15/03/09 | Dinamo Zagreb | - | HNK Šibenik | 1 | - | - | 3:0 |
| 31/05/09 | HNK Cibalia | - | HNK Šibenik | 3 | - | - | 2:1 |
Croatia