| Copa Libertadores | Matches | W | D | L |  |
 |
 |
| home | 1 | - | - | 1 | 2 | 1 | - |
| away | 1 | - | - | 1 | - | - | 1 |
| overall | 2 | - | - | 2 | 2 | 1 | 1 |
| Primera División | Matches | W | D | L | |
|
|
| home | 5 | 3 | 2 | - | 4 | - | - |
| away | 9 | - | 3 | 6 | 18 | 1 | - |
| overall | 14 | 3 | 5 | 6 | 22 | 1 | - |
| Copa Libertadores | Home | - | Guest | |
|
|
Results |
| 29/09/99 | CF América | - | Atlas Guadalajara | - | - | 1 | 2:0 |
| 01/02/04 | Atlas Guadalajara | - | CF América | 2 | 1 | - | 1:2 |
| Primera División | Home | - | Guest | |
|
|
Results |
| 02/02/02 | Atlas Guadalajara | - | CF Pachuca | 1 | - | - | 3:1 |
| 14/09/02 | Deportivo Toluca | - | Atlas Guadalajara | 2 | 1 | - | 1:0 |
| 27/10/02 | Tecos Fútbol Club | - | Atlas Guadalajara | - | - | - | 1:0 |
| 01/02/03 | Atlas Guadalajara | - | Atlético Morelia | 1 | - | - | 1:0 |
| 16/03/03 | Gallos Blancos (old) | - | Atlas Guadalajara | - | - | - | 2:2 |
| 19/04/03 | Atlas Guadalajara | - | Tecos Fútbol Club | 1 | - | - | 2:0 |
| 27/08/03 | Puebla FC | - | Atlas Guadalajara | 3 | - | - | 1:1 |
| 14/09/03 | CF América | - | Atlas Guadalajara | 3 | - | - | 3:0 |
| 22/02/04 | CF Monterrey | - | Atlas Guadalajara | 3 | - | - | 1:1 |
| 09/05/04 | Atlas Guadalajara | - | Deportivo Guadalajara | - | - | - | 1:1 |
| 03/10/04 | Atlante | - | Atlas Guadalajara | 2 | - | - | 3:2 |
| 03/12/04 | Pumas UNAM | - | Atlas Guadalajara | 3 | - | - | 4:3 |
| 06/02/05 | CF Monterrey | - | Atlas Guadalajara | 2 | - | - | 1:0 |
| 16/03/06 | Atlas Guadalajara | - | Pumas UNAM | 1 | - | - | 0:0 |
Mexico