| Regionalliga Nord | Matches | W | D | L |  |
 |
 |
| home | 1 | - | 1 | - | 1 | - | - |
| away | 2 | - | 1 | 1 | 4 | - | 1 |
| overall | 3 | - | 2 | 1 | 5 | - | 1 |
| Oberliga Nord (2004-2008) | Matches | W | D | L | |
|
|
| home | 1 | - | - | 1 | - | - | - |
| away | 1 | 1 | - | - | - | - | - |
| overall | 2 | 1 | - | 1 | - | - | - |
| Regionalliga Nord | Home | - | Guest | |
|
|
Results |
| 28/04/10 | Hertha BSC II | - | FC St. Pauli II | 1 | - | - | 3:0 |
| 13/11/11 | FC St. Pauli II | - | Germania Halberstadt | 1 | - | - | 0:0 |
| 03/04/14 | Eintracht Braunschweig II | - | FC St. Pauli II | 3 | - | 1 | 2:2 |
| Oberliga Nord (2004-2008) | Home | - | Guest | |
|
|
Results |
| 14/10/06 | VfR Neumünster | - | FC St. Pauli II | - | - | - | 0:1 |
| 27/10/07 | FC St. Pauli II | - | Holstein Kiel | - | - | - | 1:2 |
Germany