| 2. Bundesliga | Matches | W | D | L |  |
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 |
| home | 2 | 1 | 1 | - | 3 | - | - |
| away | 1 | 1 | - | - | 3 | - | - |
| overall | 3 | 2 | 1 | - | 6 | - | - |
| 3. Liga | Matches | W | D | L | |
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| home | 2 | 1 | - | 1 | 4 | - | 1 |
| away | 2 | 1 | - | 1 | 4 | 1 | - |
| overall | 4 | 2 | - | 2 | 8 | 1 | 1 |
| DFB-Pokal | Matches | W | D | L | |
|
|
| home | 1 | 1 | - | - | 1 | - | 1 |
| away | - | - | - | - | - | - | - |
| overall | 1 | 1 | - | - | 1 | - | 1 |
| Regionalliga Süd (1994-2012) | Matches | W | D | L | |
|
|
| home | 1 | - | 1 | - | 3 | - | - |
| away | - | - | - | - | - | - | - |
| overall | 1 | - | 1 | - | 3 | - | - |
| 2. Bundesliga | Home | - | Guest | |
|
|
Results |
| 29/11/97 | FSV Zwickau | - | FC Carl Zeiss Jena | 3 | - | - | 0:3 |
| 26/05/98 | FC Carl Zeiss Jena | - | 1. FC Lok Leipzig | 1 | - | - | 0:0 |
| 06/04/08 | FC Carl Zeiss Jena | - | SC Paderborn 07 | 2 | - | - | 3:0 |
| 3. Liga | Home | - | Guest | |
|
|
Results |
| 20/09/08 | Kickers Offenbach | - | FC Carl Zeiss Jena | 2 | 1 | - | 2:1 |
| 25/04/09 | FC Carl Zeiss Jena | - | Werder Bremen II | 4 | - | - | 3:1 |
| 29/04/11 | Kickers Offenbach | - | FC Carl Zeiss Jena | 2 | - | - | 0:2 |
| 13/08/11 | FC Carl Zeiss Jena | - | Preußen Münster | - | - | 1 | 1:3 |
| DFB-Pokal | Home | - | Guest | |
|
|
Results |
| 30/01/08 | FC Carl Zeiss Jena | - | Arminia Bielefeld | 1 | - | 1 | 2:1 aet |
| Regionalliga Süd (1994-2012) | Home | - | Guest | |
|
|
Results |
| 01/09/00 | FC Carl Zeiss Jena | - | Rot-Weiß Erfurt | 3 | - | - | 0:0 |
Germany