| 2. Bundesliga | Matches | W | D | L |  |
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| home | 1 | 1 | - | - | - | - | - |
| away | 1 | 1 | - | - | - | - | - |
| overall | 2 | 2 | - | - | - | - | - |
| 3. Liga | Matches | W | D | L | |
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| home | 1 | - | 1 | - | 2 | - | - |
| away | 1 | - | 1 | - | 4 | - | - |
| overall | 2 | - | 2 | - | 6 | - | - |
| DFB-Pokal | Matches | W | D | L | |
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| home | 1 | - | - | 1 | 3 | - | - |
| away | - | - | - | - | - | - | - |
| overall | 1 | - | - | 1 | 3 | - | - |
| Regionalliga Süd (1994-2012) | Matches | W | D | L | |
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| home | - | - | - | - | - | - | - |
| away | 1 | - | - | 1 | 4 | 1 | - |
| overall | 1 | - | - | 1 | 4 | 1 | - |
| 2. Bundesliga | Home | - | Guest | |
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Results |
| 25/08/06 | FC Carl Zeiss Jena | - | 1. FC Köln | - | - | - | 3:2 |
| 18/02/07 | SC Paderborn 07 | - | FC Carl Zeiss Jena | - | - | - | 0:1 |
| 3. Liga | Home | - | Guest | |
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|
Results |
| 14/02/09 | FC Carl Zeiss Jena | - | Rot-Weiß Erfurt | 2 | - | - | 1:1 |
| 10/03/18 | Preußen Münster | - | FC Carl Zeiss Jena | 4 | - | - | 2:2 |
| DFB-Pokal | Home | - | Guest | |
|
|
Results |
| 28/08/24 | FC Carl Zeiss Jena | - | Bayer Leverkusen | 3 | - | - | 0:1 |
| Regionalliga Süd (1994-2012) | Home | - | Guest | |
|
|
Results |
| 24/09/00 | VfB Stuttgart II | - | FC Carl Zeiss Jena | 4 | 1 | - | 3:0 |
Germany