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| 09/07/1999 | 17:00 | Ardena Vilnius | - | FK Atlantas | 0:2 | |
| 10/07/1999 | 17:00 | FK Nevėžis | - | FK Ekranas | 1:1 | |
| 17:00 | FK Dainava Alytus | - | Zalgiris Kaunas | 0:1 | ||
| 17:00 | Banga Gargždai | - | Inkaras Kaunas | 0:1 | ||
| 17:00 | FK Zalgiris | - | FK Kareda Siauliai | 1:2 |
| » Tables | Home | Away | First round | Second round |
| # | Team | M. | W | D | L | goals | Dif. | Pt. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
FK Kareda Siauliai | 2 | 2 | 0 | 0 | 5:1 | 4 | 6 |
| 2 |
|
FK Atlantas | 2 | 1 | 1 | 0 | 3:1 | 2 | 4 |
| 3 |
|
FK Nevėžis | 2 | 1 | 1 | 0 | 2:1 | 1 | 4 |
|
Inkaras Kaunas | 2 | 1 | 1 | 0 | 2:1 | 1 | 4 | |
| 5 |
|
FK Zalgiris | 2 | 1 | 0 | 1 | 5:3 | 2 | 3 |
| 6 |
|
Zalgiris Kaunas | 2 | 1 | 0 | 1 | 1:1 | 0 | 3 |
| 7 |
|
Banga Gargždai | 2 | 0 | 1 | 1 | 1:2 | -1 | 3 |
| 8 |
|
FK Ekranas | 2 | 0 | 2 | 0 | 2:2 | 0 | 2 |
| 9 |
|
FK Dainava Alytus | 2 | 0 | 0 | 2 | 0:4 | -4 | 0 |
| 10 |
|
Ardena Vilnius | 2 | 0 | 0 | 2 | 1:6 | -5 | -1 |
