| Europa League Qual. | M. | W | D | L | goals | |||
| at home | 1 | 1 | 0 | 0 | 2 | : | 0 | |
| Away | 1 | 0 | 1 | 0 | 1 | : | 1 | |
| ∑ | 2 | 1 | 1 | 0 | 3 | : | 1 | |
| Conference League | M. | W | D | L | goals | |||
| at home | 1 | 1 | 0 | 0 | 2 | : | 1 | |
| Away | 1 | 0 | 0 | 1 | 0 | : | 2 | |
| ∑ | 2 | 1 | 0 | 1 | 2 | : | 3 | |
| overall | M. | W | D | L | goals | |||
| at home | 2 | 2 | 0 | 0 | 4 | : | 1 | |
| Away | 2 | 0 | 1 | 1 | 1 | : | 3 | |
| Neutral Place | 0 | 0 | 0 | 0 | 0 | : | 0 | |
| ∑ | 4 | 2 | 1 | 1 | 5 | : | 4 | |
| Europa League Qual. | |||||
| 2013/2014 | 2. Round | Pyunik FC | - | VMFD Žalgiris | 1:1 (0:0) |
| 2013/2014 | 2. Round | VMFD Žalgiris | - | Pyunik FC | 2:0 (0:0) |
| Conference League | |||||
| 2022/2023 | Group H | FK Žalgiris | - | Pyunik FC | 2:1 (2:0) |
| 2022/2023 | Group H | Pyunik FC | - | FK Žalgiris | 2:0 (1:0) |
|
For games that were decided on penalties the score after 120 minutes will be included in the ranking |
Lithuania 
![MFA Žalgiris [Women]](https://s.hs-data.com/bilder/wappen/mini/35950.gif?fallback=png "MFA Žalgiris [Women]"){kind=small}
![FK Žalgiris [Youth]](https://s.hs-data.com/bilder/wappen/mini/26671.gif?fallback=png "FK Žalgiris [Youth]"){kind=small}
![FK Žalgiris [Youth B]](https://s.hs-data.com/bilder/wappen/mini/26672.gif?fallback=png "FK Žalgiris [Youth B]"){kind=small}
![MFA Žalgiris [Youth B Women]](https://s.hs-data.com/bilder/wappen/mini/35951.gif?fallback=png "MFA Žalgiris [Youth B Women]"){kind=small}
![FK Žalgiris [Youth C]](https://s.hs-data.com/bilder/wappen/mini/50627.gif?fallback=png "FK Žalgiris [Youth C]"){kind=small}
