| Period | Manager | Country | born |
| 29/01/2024 - 31/12/2025 | Efrén Mera |
|
23/06/1985 |
| 23/09/2023 - 31/12/2023 | Jefferson Huerta |
|
12/04/1977 |
| 15/04/2022 - 20/09/2023 | Fabián Frías |
|
05/03/1971 |
| 01/01/2022 - 08/04/2022 | Pablo Trobbiani |
|
28/12/1976 |
| 24/11/2019 - 31/12/2021 | Fabián Frías |
|
05/03/1971 |
| 15/11/2019 - 31/12/2019 | Juan Garcés |
|
12/11/1981 |
| 01/01/2019 - 11/11/2019 | Pablo Saucedo |
|
06/03/1982 |
| 15/08/2014 - 31/12/2014 | Armando Osma |
|
07/02/1961 |
| 01/01/2014 - 14/08/2014 | Juan Llop |
|
01/06/1963 |
| 01/07/2013 - 31/12/2013 | Fabián Bustos |
|
28/03/1969 |
| 01/01/2013 - 30/06/2013 | Edwin Cozar |
|
20/10/1965 |
| 31/08/2011 - 31/12/2012 | Armando Osma |
|
07/02/1961 |
| 02/05/2011 - 30/08/2011 | Carlos Pico |
|
16/10/1956 |
| 01/01/2011 - 01/05/2011 | Gabriel Perrone |
|
15/04/1965 |
| 01/01/2010 - 31/12/2010 | Fabián Bustos |
|
28/03/1969 |
| 12/05/2003 - 23/06/2003 | Carlos Sevilla |
|
26/08/1950 |
![Manta [U20]](https://s.hs-data.com/bilder/wappen/mini/32149.gif?fallback=png "Manta [U20]"){kind=small}
![Manta FC [U19]](https://s.hs-data.com/bilder/wappen/mini/40478.gif?fallback=png "Manta FC [U19]"){kind=small}
![Manta FC [U17]](https://s.hs-data.com/bilder/wappen/mini/40505.gif?fallback=png "Manta FC [U17]"){kind=small}
![Manta [U16]](https://s.hs-data.com/bilder/wappen/mini/31962.gif?fallback=png "Manta [U16]"){kind=small}