| Period | Manager | Country | born |
| 28/04/2024 - 31/12/2025 | Éver Almeida |
|
01/07/1948 |
| 30/05/2023 - 26/04/2024 | Renato Salas |
|
15/02/1970 |
| 01/01/2021 - 30/05/2023 | Geovanny Cumbicus |
|
25/01/1980 |
| 01/01/2020 - 31/12/2020 | Ricardo Dillon |
|
04/08/1964 |
| 30/05/2019 - 31/12/2019 | Martín Cardetti |
|
22/10/1975 |
| 01/01/2018 - 27/05/2019 | Geovanny Cumbicus |
|
25/01/1980 |
| 14/04/2016 - 04/07/2016 | Néstor Clausen |
|
29/09/1962 |
| 12/04/2016 - 31/12/2016 | Luis Mosquera |
|
14/12/1964 |
| 01/01/2016 - 11/04/2016 | Humberto Pizarro |
|
28/07/1967 |
| 31/03/2015 - 31/12/2015 | Sixto Vizuete |
|
13/01/1961 |
| 07/04/2014 - 30/03/2015 | Julio Asad |
|
07/06/1953 |
| 01/01/2013 - 06/04/2014 | César Vigevani |
|
30/08/1974 |
![Mushuc Runa [U19]](https://s.hs-data.com/bilder/wappen/mini/40489.gif?fallback=png "Mushuc Runa [U19]"){kind=small}
![Mushuc Runa [U17]](https://s.hs-data.com/bilder/wappen/mini/40514.gif?fallback=png "Mushuc Runa [U17]"){kind=small}