| 16. Round | 08/03/2025 | Dynamo České Budějovice [Youth] | - | Banik Ostrava [Youth] | 3:5 | ||||
| 17. Round | 14/03/2025 | Dynamo České Budějovice [Youth] | - | AC Sparta Praha [Youth] | 1:1 |  |
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| 18. Round | 22/03/2025 | FK Dukla Praha [Youth] | - | Dynamo České Budějovice [Youth] | 3:2 | ||||
| 19. Round | 29/03/2025 | Dynamo České Budějovice [Youth] | - | Viktoria Plzeň [Youth] | 4:2 | ||||
| 21. Round | 12/04/2025 | Dynamo České Budějovice [Youth] | - | FK Mladá Boleslav [Youth] | 4:2 | ||||
| 22. Round | 18/04/2025 | FK Pardubice [Youth] | - | Dynamo České Budějovice [Youth] | 5:2 | ||||
| 25. Round | 10/05/2025 | Dynamo České Budějovice [Youth] | - | Slovan Liberec [Youth] | 7:2 | ||||
| 26. Round | 17/05/2025 | SFC Opava [Youth] | - | Dynamo České Budějovice [Youth] | 0:2 |  |
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| 27. Round | 22/05/2025 | Dynamo České Budějovice [Youth] | - | 1. FC Slovácko [Youth] | 3:2 | ||||
| 28. Round | 31/05/2025 | FC Zlín [Youth] | - | Dynamo České Budějovice [Youth] | 2:2 | |
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| 29. Round | 07/06/2025 | Dynamo České Budějovice [Youth] | - | Sigma Olomouc [Youth] | 0:3 | |
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| 30. Round | 11/06/2025 | FC Zbrojovka Brno [Youth] | - | Dynamo České Budějovice [Youth] | 1:3 | |
Czech Republic