| 10. Round | 07/10/2023 | MFK Karviná [Youth] | - | FC Zlín [Youth] | 6:2 | ||||
| 15. Round | 21/02/2024 | FC Zlín [Youth] | - | AC Sparta Praha [Youth] | 2:2 |  |
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| 17. Round | 08/03/2024 | FC Zlín [Youth] | - | Vysočina Jihlava [Youth] | 0:3 | ||||
| 18. Round | 15/03/2024 | FK Dukla Praha [Youth] | - | FC Zlín [Youth] | 3:3 |  |
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| 24. Round | 27/04/2024 | Banik Ostrava [Youth] | - | FC Zlín [Youth] | 1:1 | ||||
| 25. Round | 04/05/2024 | FC Zlín [Youth] | - | MFK Karviná [Youth] | 4:1 | ||||
| 26. Round | 11/05/2024 | Viktoria Plzeň [Youth] | - | FC Zlín [Youth] | 2:0 | |
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| 27. Round | 18/05/2024 | FC Zlín [Youth] | - | 1. FC Slovácko [Youth] | 2:2 | ||||
| 28. Round | 25/05/2024 | Sigma Olomouc [Youth] | - | FC Zlín [Youth] | 2:1 | ||||
| 29. Round | 31/05/2024 | FC Zlín [Youth] | - | FK Pardubice [Youth] | 4:0 | ||||
| 30. Round | 08/06/2024 | AC Sparta Praha [Youth] | - | FC Zlín [Youth] | 1:4 |
Czech Republic