| 1. Round | 09/08/2024 | FC Zlín [Youth B] | - | Vysočina Jihlava [Youth B] | 2:2 |  |
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| 4. Round | 30/08/2024 | Slavia Praha [Youth B] | - | FC Zlín [Youth B] | 9:1 | ||||
| 14. Round | 09/11/2024 | FC Zlín [Youth B] | - | FK Dukla Praha [Youth B] | 1:2 | ||||
| 15. Round | 16/11/2024 | Viktoria Plzeň [Youth B] | - | FC Zlín [Youth B] | 2:2 | ||||
| 23. Round | 26/04/2025 | FC Zlín [Youth B] | - | 1. FC Slovácko [Youth B] | 2:3 |
Czech Republic