| 1. Round | 09/08/2024 | FC Zlín [Youth B] | - | Vysočina Jihlava [Youth B] | 2:2 |  |
|||
| 4. Round | 30/08/2024 | Slavia Praha [Youth B] | - | FC Zlín [Youth B] | 9:1 | ||||
| 14. Round | 09/11/2024 | FC Zlín [Youth B] | - | FK Dukla Praha [Youth B] | 1:2 | ||||
| 15. Round | 16/11/2024 | Viktoria Plzeň [Youth B] | - | FC Zlín [Youth B] | 2:2 | ||||
| 23. Round | 26/04/2025 | FC Zlín [Youth B] | - | 1. FC Slovácko [Youth B] | 2:3 | ||||
| 24. Round | 03/05/2025 | AC Sparta Praha [Youth B] | - | FC Zlín [Youth B] | 3:1 | ||||
| 26. Round | 17/05/2025 | FC Zlín [Youth B] | - | FC Zbrojovka Brno [Youth B] | 1:2 | ||||
| 27. Round | 25/05/2025 | Banik Ostrava [Youth B] | - | FC Zlín [Youth B] | 2:3 | ||||
| 28. Round | 31/05/2025 | FC Zlín [Youth B] | - | Dynamo České Budějovice [Youth B] | 0:4 | ||||
| 29. Round | 06/06/2025 | FK Dukla Praha [Youth B] | - | FC Zlín [Youth B] | 2:0 | ||||
| 30. Round | 11/06/2025 | FC Zlín [Youth B] | - | Viktoria Plzeň [Youth B] | 2:3 |  |
Czech Republic