| 18. Round | 09/03/2025 | 1. FC Slovácko B | - | FK Hodonín | 2:2 |  |
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| 20. Round | 22/03/2025 | FC Slovan Rosice | - | FK Hodonín | 1:2 | ||||
| 19. Round | 26/03/2025 | FK Hodonín | - | FK Frýdek-Místek | 1:2 | |
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| 21. Round | 29/03/2025 | FK Hodonín | - | TJ Start Brno | 2:0 | ||||
| 22. Round | 04/04/2025 | FC Hlučín | - | FK Hodonín | 1:1 | ||||
| 23. Round | 12/04/2025 | FK Hodonín | - | MFK Karviná B | 1:0 | ||||
| 24. Round | 18/04/2025 | FC Zlín B | - | FK Hodonín | 0:0 | |
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| 25. Round | 25/04/2025 | FK Hodonín | - | FC Zbrojovka Brno B | 4:3 | ||||
| 33. Round | 30/04/2025 | FK Hodonín | - | FK Třinec | 0:4 | ||||
| 26. Round | 03/05/2025 | FK Blansko | - | FK Hodonín | 1:3 | ||||
| 27. Round | 10/05/2025 | FK Hodonín | - | ČSK Uherský Brod | 5:2 | ||||
| 28. Round | 16/05/2025 | FC Zlínsko | - | FK Hodonín | 1:4 | ||||
| 34. Round | 21/05/2025 | 1. SC Znojmo | - | FK Hodonín | 2:3 | ||||
| 29. Round | 27/05/2025 | FK Hodonín | - | SK Uničov | 0:2 | |
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| 30. Round | 29/05/2025 | FC Strání | - | FK Hodonín | 2:2 | |
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| 32. Round | 04/06/2025 | TJ Unie Hlubina | - | FK Hodonín | 3:5 | ||||
| 31. Round | 07/06/2025 | FK Hodonín | - | Hanácká Slávia Kroměříž | 2:2 |
Czech Republic