| 1. Round | 18/09/2008 | Sporting Braga | - | FC Artmedia Petržalka | 4:0 |  |
|||
| 1. Round | 02/10/2008 | FC Artmedia Petržalka | - | Sporting Braga | 0:2 | ||||
| Group E | 23/10/2008 | Sporting Braga | - | Portsmouth FC | 3:0 | ||||
| Group E | 06/11/2008 | AC Milan | - | Sporting Braga | 1:0 | ||||
| Group E | 27/11/2008 | Sporting Braga | - | VfL Wolfsburg | 2:3 | |
 |
||
| Group E | 04/12/2008 | sc Heerenveen | - | Sporting Braga | 1:2 | ||||
| 3. Round | 18/02/2009 | Sporting Braga | - | Standard Liège | 3:0 | ||||
| 3. Round | 26/02/2009 | Standard Liège | - | Sporting Braga | 1:1 |
Cameroon