| 1. Round | 10/08/2024 | 1. FC Slovácko [Youth] | - | FK Mladá Boleslav [Youth] | 4:2 | ||||
| 2. Round | 16/08/2024 | FK Mladá Boleslav [Youth] | - | FC Zlín [Youth] | 3:0 |  |
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| 3. Round | 24/08/2024 | Sigma Olomouc [Youth] | - | FK Mladá Boleslav [Youth] | 1:0 | ||||
| 5. Round | 23/10/2024 | Banik Ostrava [Youth] | - | FK Mladá Boleslav [Youth] | 3:3 | |
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| 15. Round | 16/11/2024 | FK Mladá Boleslav [Youth] | - | SFC Opava [Youth] | 2:1 | ||||
| 10. Round | 23/11/2024 | AC Sparta Praha [Youth] | - | FK Mladá Boleslav [Youth] | 6:2 |
Czech Republic