| 1. Round | 28/02/1999 | FC Zürich | - | FC St. Gallen | 0:2 | ||||
| 2. Round | 06/03/1999 | FC St. Gallen | - | Servette FC | 2:0 |  |
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| 4. Round | 20/03/1999 | FC St. Gallen | - | FC Luzern | 0:2 | ||||
| 5. Round | 03/04/1999 | Lausanne Sports | - | FC St. Gallen | 4:1 | ||||
| 6. Round | 10/04/1999 | FC St. Gallen | - | Grasshopper Club Zürich | 0:0 | ||||
| 7. Round | 18/04/1999 | FC Basel 1893 | - | FC St. Gallen | 3:3 | ||||
| 8. Round | 25/04/1999 | FC St. Gallen | - | FC Basel 1893 | 1:2 | ||||
| 9. Round | 02/05/1999 | Grasshopper Club Zürich | - | FC St. Gallen | 4:0 | ||||
| 10. Round | 08/05/1999 | FC St. Gallen | - | Lausanne Sports | 0:0 | ||||
| 11. Round | 15/05/1999 | FC Luzern | - | FC St. Gallen | 2:1 | ||||
| 13. Round | 30/05/1999 | Servette FC | - | FC St. Gallen | 2:0 | ||||
| 14. Round | 02/06/1999 | FC St. Gallen | - | FC Zürich | 1:3 |
France