| 2. Round | 02/03/2024 | Oita Trinita | - | Yokohama FC | 0:0 | ||||
| 3. Round | 09/03/2024 | Yokohama FC | - | Montedio Yamagata | 2:0 | ||||
| 4. Round | 16/03/2024 | Tochigi SC | - | Yokohama FC | 1:0 | ||||
| 5. Round | 20/03/2024 | Yokohama FC | - | Thespa Gunma | 1:0 | ||||
| 6. Round | 24/03/2024 | Kagoshima United | - | Yokohama FC | 0:4 |  |
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| 7. Round | 30/03/2024 | Yokohama FC | - | Vegalta Sendai | 1:2 | ||||
| 34. Round | 06/10/2024 | Yokohama FC | - | Kagoshima United | 1:0 | ||||
| 36. Round | 27/10/2024 | Yokohama FC | - | Fagiano Okayama | 2:4 | ||||
| 38. Round | 10/11/2024 | Renofa Yamaguchi | - | Yokohama FC | 0:0 |
Japan