| 8. Round | 17/08/2016 | Kuban Krasnodar (1928-2018) | - | Sibir Novosibirsk | 1:1 | ||||
| 9. Round | 21/08/2016 | Mordovia Saransk | - | Kuban Krasnodar (1928-2018) | 1:3 |  |
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| 10. Round | 28/08/2016 | FK Neftekhimik | - | Kuban Krasnodar (1928-2018) | 1:4 | ||||
| 11. Round | 03/09/2016 | Kuban Krasnodar (1928-2018) | - | Fakel Voronezh | 0:0 | ||||
| 12. Round | 10/09/2016 | Kuban Krasnodar (1928-2018) | - | Sokol Saratov | 0:0 | ||||
| 13. Round | 17/09/2016 | Kuban Krasnodar (1928-2018) | - | Shinnik Yaroslavl | 0:1 | ||||
| 14. Round | 26/09/2016 | FK Tyumen | - | Kuban Krasnodar (1928-2018) | 2:0 | ||||
| 15. Round | 01/10/2016 | Kuban Krasnodar (1928-2018) | - | Enisey Krasnoyarsk | 2:1 | ||||
| 16. Round | 08/10/2016 | Dinamo Moskva | - | Kuban Krasnodar (1928-2018) | 1:0 | ||||
| 17. Round | 15/10/2016 | Kuban Krasnodar (1928-2018) | - | Baltika Kaliningrad | 1:1 | ||||
| 18. Round | 22/10/2016 | Zenit St. Petersburg 2 | - | Kuban Krasnodar (1928-2018) | 0:4 | ||||
| 19. Round | 30/10/2016 | Kuban Krasnodar (1928-2018) | - | Volgar Astrakhan | 1:0 | ||||
| 20. Round | 05/11/2016 | Luch-Energiya Vladivostok | - | Kuban Krasnodar (1928-2018) | 2:1 |
Russia