| 10. Round | 12/10/2024 | FK Loko Vltavín | - | FC Chomutov | 1:1 | ||||
| 12. Round | 27/10/2024 | Povltavská FA | - | FC Chomutov | 2:2 | ||||
| 13. Round | 01/11/2024 | FC Chomutov | - | Dynamo České Budějovice B | 1:0 | ||||
| 15. Round | 15/11/2024 | FK Příbram | - | FC Chomutov | 1:0 | ||||
| 16. Round | 23/11/2024 | FC Chomutov | - | Slovan Velvary | 3:2 | ||||
| 18. Round | 08/03/2025 | Slovan Velvary | - | FC Chomutov | 1:0 | ||||
| 19. Round | 15/03/2025 | FC Chomutov | - | FK Motorlet Praha | 2:3 | ||||
| 20. Round | 23/03/2025 | Bohemians Praha 1905 B | - | FC Chomutov | 1:1 | ||||
| 23. Round | 11/04/2025 | FC Chomutov | - | FC Písek | 1:2 | ||||
| 25. Round | 26/04/2025 | FC Chomutov | - | Viktoria Plzeň B | 1:2 |  |
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| 26. Round | 04/05/2025 | FK Admira Praha | - | FC Chomutov | 2:1 | ||||
| 32. Round | 07/05/2025 | FC Chomutov | - | FK Příbram | 0:3 | ||||
| 27. Round | 10/05/2025 | FC Chomutov | - | FK Loko Vltavín | 2:1 |
Czech Republic