| 3. Round | 31/08/2008 | FSV Frankfurt | - | SpVgg Greuther Fürth | 1:1 | ||||
| 4. Round | 14/09/2008 | VfL Osnabrück | - | FSV Frankfurt | 3:2 | ||||
| 5. Round | 21/09/2008 | FSV Frankfurt | - | Rot-Weiß Oberhausen | 3:1 | ||||
| 6. Round | 28/09/2008 | 1. FC Kaiserslautern | - | FSV Frankfurt | 2:1 | ||||
| 7. Round | 03/10/2008 | FSV Frankfurt | - | TSV 1860 München | 0:3 | ||||
| 9. Round | 24/10/2008 | FSV Frankfurt | - | Hansa Rostock | 0:0 | ||||
| 13. Round | 16/11/2008 | FSV Frankfurt | - | SC Freiburg | 1:2 |  |
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| 14. Round | 21/11/2008 | MSV Duisburg | - | FSV Frankfurt | 0:0 | ||||
| 15. Round | 01/12/2008 | FSV Frankfurt | - | 1. FSV Mainz 05 | 1:4 | ||||
| 25. Round | 20/03/2009 | FSV Frankfurt | - | SV Wehen Wiesbaden | 2:1 | ||||
| 26. Round | 05/04/2009 | Hansa Rostock | - | FSV Frankfurt | 2:0 | ||||
| 27. Round | 12/04/2009 | FSV Frankfurt | - | FC Augsburg | 2:1 | ||||
| 28. Round | 19/04/2009 | Alemannia Aachen | - | FSV Frankfurt | 2:0 | ||||
| 30. Round | 03/05/2009 | SC Freiburg | - | FSV Frankfurt | 4:1 |
Germany