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| 03/04/2009 | 17:00 | MSV Duisburg | - | 1. FSV Mainz 05 | 0:1 (0:1) | |
| 17:00 | 1. FC Nürnberg | - | TuS Koblenz | 2:0 (1:0) | ||
| 17:00 | FC Augsburg | - | FC Ingolstadt 04 | 1:1 (0:1) | ||
| 05/04/2009 | 13:00 | Alemannia Aachen | - | SpVgg Greuther Fürth | 1:0 (0:0) | |
| 13:00 | SV Wehen Wiesbaden | - | FC St. Pauli | 3:1 (1:1) | ||
| 13:00 | TSV 1860 München | - | VfL Osnabrück | 1:1 (0:1) | ||
| 13:00 | Hansa Rostock | - | FSV Frankfurt | 2:0 (1:0) | ||
| 13:00 | 1. FC Kaiserslautern | - | Rot-Weiß Oberhausen | 1:1 (1:0) | ||
| 06/04/2009 | 19:15 | SC Freiburg | - | Rot Weiss Ahlen | 1:1 (0:0) |
| » Tables | Home | Away | First round | Second round | First half | Second half |
| # | Team | M. | W | D | L | goals | Dif. | Pt. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
SC Freiburg | 26 | 15 | 4 | 7 | 40:25 | 15 | 49 |
| 2 |
|
1. FSV Mainz 05 | 26 | 13 | 8 | 5 | 47:29 | 18 | 47 |
| 3 |
|
SpVgg Greuther Fürth | 26 | 13 | 6 | 7 | 52:37 | 15 | 45 |
| 4 |
|
1. FC Nürnberg | 26 | 11 | 10 | 5 | 39:25 | 14 | 43 |
| 5 |
|
1. FC Kaiserslautern | 26 | 12 | 6 | 8 | 41:32 | 9 | 42 |
| 6 |
|
MSV Duisburg | 26 | 10 | 10 | 6 | 38:26 | 12 | 40 |
| 7 |
|
Alemannia Aachen | 26 | 11 | 6 | 9 | 43:33 | 10 | 39 |
| 8 |
|
FC St. Pauli | 26 | 11 | 5 | 10 | 43:50 | -7 | 38 |
| 9 |
|
Rot-Weiß Oberhausen | 26 | 10 | 6 | 10 | 29:39 | -10 | 36 |
| 10 |
|
TSV 1860 München | 26 | 9 | 7 | 10 | 35:32 | 3 | 34 |
| 11 |
|
FC Augsburg | 26 | 8 | 8 | 10 | 31:33 | -2 | 32 |
| 12 |
|
Rot Weiss Ahlen | 26 | 9 | 5 | 12 | 30:46 | -16 | 32 |
| 13 |
|
FSV Frankfurt | 26 | 7 | 9 | 10 | 27:34 | -7 | 30 |
| 14 |
|
TuS Koblenz | 26 | 8 | 7 | 11 | 36:38 | -2 | 28 |
| 15 |
|
VfL Osnabrück | 26 | 6 | 10 | 10 | 35:46 | -11 | 28 |
| 16 |
|
FC Ingolstadt 04 | 26 | 6 | 8 | 12 | 28:42 | -14 | 26 |
| 17 |
|
Hansa Rostock | 26 | 5 | 9 | 12 | 36:44 | -8 | 24 |
| 18 |
|
SV Wehen Wiesbaden | 26 | 4 | 8 | 14 | 25:44 | -19 | 20 |
| Promotion | |
| Playoffs | |
| Playoffs | |
| Relegation |
