| 16. Round | 29/11/2008 | Viktoria Plzeň | - | Sigma Olomouc | 4:0 | ||||
| 21. Round | 22/03/2009 | 1. FC Brno | - | Sigma Olomouc | 1:2 | ||||
| 22. Round | 05/04/2009 | Sigma Olomouc | - | Slavia Praha | 1:0 | ||||
| 24. Round | 19/04/2009 | Sigma Olomouc | - | Dynamo České Budějovice | 1:1 | ||||
| 27. Round | 09/05/2009 | 1. FK Příbram | - | Sigma Olomouc | 2:1 | ||||
| 28. Round | 17/05/2009 | Sigma Olomouc | - | Tescoma Zlín | 1:1 | ||||
| 30. Round | 30/05/2009 | Sigma Olomouc | - | Bohemians Praha | 3:0 |
Czech Republic