| 3. Round | 11/08/2012 | FK Baumit Jablonec | - | Slovan Liberec | 1:0 | ||||
| 4. Round | 19/08/2012 | Zbrojovka Brno | - | FK Baumit Jablonec | 1:4 | ||||
| 6. Round | 31/08/2012 | FK Teplice | - | FK Baumit Jablonec | 0:4 | ||||
| 7. Round | 14/09/2012 | FK Baumit Jablonec | - | 1. FK Příbram | 2:2 | ||||
| 8. Round | 22/09/2012 | 1. FC Slovácko | - | FK Baumit Jablonec | 0:1 | ||||
| 9. Round | 01/10/2012 | FK Baumit Jablonec | - | FK Dukla Praha | 2:2 | ||||
| 10. Round | 07/10/2012 | FK Baumit Jablonec | - | Dynamo České Budějovice | 2:1 | ||||
| 15. Round | 18/11/2012 | Sigma Olomouc | - | FK Baumit Jablonec | 0:1 | ||||
| 16. Round | 24/11/2012 | FK Baumit Jablonec | - | FC Hradec Králové | 3:2 |  |
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| 22. Round | 07/04/2013 | FK Baumit Jablonec | - | 1. FC Slovácko | 4:1 | ||||
| 24. Round | 19/04/2013 | Dynamo České Budějovice | - | FK Baumit Jablonec | 2:1 | ||||
| 26. Round | 05/05/2013 | Slavia Praha | - | FK Baumit Jablonec | 5:1 | ||||
| 29. Round | 26/05/2013 | FK Baumit Jablonec | - | Sigma Olomouc | 2:1 | ||||
| 30. Round | 01/06/2013 | Baník Ostrava | - | FK Baumit Jablonec | 0:1 |
Czech Republic