| 17. Round | 08/03/2024 | FK Ústí nad Labem | - | FK Mlada Boleslav B | 2:2 | ||||
| 18. Round | 16/03/2024 | FK Pardubice B | - | FK Mlada Boleslav B | 1:0 | ||||
| 19. Round | 23/03/2024 | FK Mlada Boleslav B | - | Sokol Živanice | 3:0 | ||||
| 20. Round | 29/03/2024 | FK Baník Most-Souš | - | FK Mlada Boleslav B | 0:0 | ||||
| 21. Round | 07/04/2024 | FK Mlada Boleslav B | - | FK Jablonec B | 1:3 | ||||
| 22. Round | 13/04/2024 | FK Kolín | - | FK Mlada Boleslav B | 1:0 | ||||
| 23. Round | 21/04/2024 | FC Hradec Králové B | - | FK Mlada Boleslav B | 2:0 |  |
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| 24. Round | 28/04/2024 | FK Mlada Boleslav B | - | Slovan Liberec B | 0:2 | ||||
| 25. Round | 05/05/2024 | Chlumec nad Cidlinou | - | FK Mlada Boleslav B | 1:2 | ||||
| 26. Round | 12/05/2024 | FK Mlada Boleslav B | - | Sokol Brozany | 1:0 | ||||
| 27. Round | 17/05/2024 | Arsenal Česká Lípa | - | FK Mlada Boleslav B | 0:4 | ||||
| 28. Round | 26/05/2024 | FK Mlada Boleslav B | - | FK Teplice B | 0:1 | ||||
| 29. Round | 01/06/2024 | Slovan Velvary | - | FK Mlada Boleslav B | 3:3 | ||||
| 30. Round | 08/06/2024 | FK Mlada Boleslav B | - | FK Přepeře | 0:0 |
Czech Republic