| 6. Round | 11/09/2016 | Bohemians Praha 1905 | - | Zbrojovka Brno | 3:0 | ||||
| 7. Round | 17/09/2016 | FK Dukla Praha | - | Bohemians Praha 1905 | 4:1 | ||||
| 8. Round | 24/09/2016 | Bohemians Praha 1905 | - | 1. FK Příbram | 1:0 | ||||
| 9. Round | 30/09/2016 | Vysočina Jihlava | - | Bohemians Praha 1905 | 0:2 |  |
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| 10. Round | 14/10/2016 | Bohemians Praha 1905 | - | FK Mladá Boleslav | 1:3 |  |
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| 11. Round | 21/10/2016 | FC Fastav Zlín | - | Bohemians Praha 1905 | 1:1 | ||||
| 12. Round | 30/10/2016 | Bohemians Praha 1905 | - | Slovan Liberec | 2:1 | ||||
| 13. Round | 05/11/2016 | Slavia Praha | - | Bohemians Praha 1905 | 1:1 | ||||
| 14. Round | 19/11/2016 | Bohemians Praha 1905 | - | FK Teplice | 0:1 | ||||
| 15. Round | 26/11/2016 | MFK Karviná | - | Bohemians Praha 1905 | 3:0 |
Czech Republic