| 6. Round | 10/09/2011 | Bohemians 1905 | - | 1. FC Slovácko | 1:1 | ||||
| 7. Round | 17/09/2011 | 1. FC Slovácko | - | Dynamo České Budějovice | 2:0 | ||||
| 10. Round | 14/10/2011 | 1. FC Slovácko | - | Viktoria Plzeň | 1:3 | ||||
| 12. Round | 30/10/2011 | 1. FC Slovácko | - | Slavia Praha | 1:3 | ||||
| 13. Round | 06/11/2011 | FK Teplice | - | 1. FC Slovácko | 2:1 | ||||
| 19. Round | 02/03/2012 | FK Dukla Praha | - | 1. FC Slovácko | 2:0 | ||||
| 20. Round | 10/03/2012 | 1. FC Slovácko | - | Bohemians 1905 | 3:2 | ||||
| 21. Round | 18/03/2012 | Dynamo České Budějovice | - | 1. FC Slovácko | 2:2 | ||||
| 22. Round | 24/03/2012 | 1. FC Slovácko | - | Baník Ostrava | 1:0 | ||||
| 23. Round | 01/04/2012 | FK Baumit Jablonec | - | 1. FC Slovácko | 1:0 | ||||
| 27. Round | 28/04/2012 | 1. FC Slovácko | - | FK Teplice | 0:0 | ||||
| 29. Round | 09/05/2012 | 1. FC Slovácko | - | Viktoria Žižkov | 2:1 | ||||
| 30. Round | 12/05/2012 | 1. FK Příbram | - | 1. FC Slovácko | 0:4 |
Czech Republic