| 2. Round | 06/03/1999 | Etoile Carouge FC | - | FC Wil 1900 | 1:3 |  |
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| 3. Round | 14/03/1999 | Yverdon Sport FC | - | Etoile Carouge FC | 1:0 | ||||
| 4. Round | 20/03/1999 | Etoile Carouge FC | - | FC Lugano | 0:2 | ||||
| 1. Round | 03/04/1999 | FC Sion | - | Etoile Carouge FC | 1:0 | ||||
| 5. Round | 05/04/1999 | BSC Young Boys | - | Etoile Carouge FC | 1:1 | ||||
| 6. Round | 10/04/1999 | Etoile Carouge FC | - | FC Aarau | 3:1 | ||||
| 7. Round | 17/04/1999 | Etoile Carouge FC | - | SR Delémont | 1:2 | ||||
| 8. Round | 25/04/1999 | SR Delémont | - | Etoile Carouge FC | 1:1 | ||||
| 9. Round | 01/05/1999 | FC Aarau | - | Etoile Carouge FC | 3:1 | ||||
| 11. Round | 15/05/1999 | FC Lugano | - | Etoile Carouge FC | 1:1 | ||||
| 12. Round | 22/05/1999 | Etoile Carouge FC | - | Yverdon Sport FC | 2:1 | |
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| 13. Round | 29/05/1999 | FC Wil 1900 | - | Etoile Carouge FC | 3:4 | ||||
| 14. Round | 05/06/1999 | Etoile Carouge FC | - | FC Sion | 2:1 |
Spain