| 1. Round | 16/02/2025 | Tokyo Verdy | - | Shimizu S-Pulse | 0:1 | ||||
| 2. Round | 22/02/2025 | Shimizu S-Pulse | - | Albirex Niigata | 2:0 | ||||
| 3. Round | 26/02/2025 | Shimizu S-Pulse | - | Sanfrecce Hiroshima | 1:1 | ||||
| 4. Round | 02/03/2025 | Fagiano Okayama | - | Shimizu S-Pulse | 1:1 |  |
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| 5. Round | 08/03/2025 | Gamba Osaka | - | Shimizu S-Pulse | 1:0 | ||||
| 6. Round | 16/03/2025 | Shimizu S-Pulse | - | Kyoto Sanga FC | 1:2 | ||||
| 7. Round | 29/03/2025 | Shimizu S-Pulse | - | Shonan Bellmare | 3:0 | ||||
| 8. Round | 02/04/2025 | Urawa Red Diamonds | - | Shimizu S-Pulse | 2:1 | ||||
| 9. Round | 06/04/2025 | Yokohama FC | - | Shimizu S-Pulse | 2:0 | ||||
| 10. Round | 12/04/2025 | Shimizu S-Pulse | - | Kawasaki Frontale | 1:1 | ||||
| 16. Round | 11/05/2025 | Shimizu S-Pulse | - | FC Machida Zelvia | 2:2 | ||||
| 17. Round | 17/05/2025 | Kashima Antlers | - | Shimizu S-Pulse | 1:0 | ||||
| 18. Round | 25/05/2025 | Shimizu S-Pulse | - | Vissel Kobe | 3:2 | ||||
| 19. Round | 01/06/2025 | Cerezo Osaka | - | Shimizu S-Pulse | 4:2 | ||||
| 20. Round | 15/06/2025 | Shimizu S-Pulse | - | Gamba Osaka | 0:0 | ||||
| 21. Round | 21/06/2025 | Nagoya Grampus | - | Shimizu S-Pulse | 1:1 |
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