| 1. Round | 30/07/2006 | Dynamo České Budějovice | - | Slovan Liberec | 0:2 |  |
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| 2. Round | 06/08/2006 | Sigma Olomouc | - | Dynamo České Budějovice | 0:0 | ||||
| 6. Round | 10/09/2006 | SK Kladno | - | Dynamo České Budějovice | 2:1 | ||||
| 8. Round | 24/09/2006 | AC Sparta Praha | - | Dynamo České Budějovice | 3:0 | ||||
| 15. Round | 20/11/2006 | Slavia Praha | - | Dynamo České Budějovice | 2:0 | ||||
| 19. Round | 18/03/2007 | Dynamo České Budějovice | - | FK SIAD Most | 0:0 | ||||
| 20. Round | 31/03/2007 | 1. FC Slovácko | - | Dynamo České Budějovice | 0:1 | ||||
| 21. Round | 08/04/2007 | Dynamo České Budějovice | - | SK Kladno | 0:2 | |
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| 22. Round | 15/04/2007 | FK Jablonec 97 | - | Dynamo České Budějovice | 0:0 | ||||
| 24. Round | 22/04/2007 | Viktoria Plzeň | - | Dynamo České Budějovice | 2:2 | ||||
| 25. Round | 29/04/2007 | Dynamo České Budějovice | - | FK Mladá Boleslav | 0:3 | ||||
| 28. Round | 12/05/2007 | Tescoma Zlín | - | Dynamo České Budějovice | 2:1 | |
Czech Republic