| 1. Round | 20/03/2025 | FC Gifu | - | Yokohama FC | 0:2 | ||||
| 2. Round | 16/04/2025 | Giravanz Kitakyushu | - | Yokohama FC | 1:2 | ||||
| 3. Round | 21/05/2025 | Yokohama FC | - | FC Machida Zelvia | 3:1 pso | ||||
| Play-offs | 04/06/2025 | Cerezo Osaka | - | Yokohama FC | 4:1 | ||||
| Play-offs | 08/06/2025 | Yokohama FC | - | Cerezo Osaka | 4:0 aet |
Japan