| 3. Round | 09/08/2008 | FC Wil 1900 | - | FC Wohlen | 3:0 | ||||
| 6. Round | 30/08/2008 | FC Schaffhausen | - | FC Wil 1900 | 1:3 | ||||
| 8. Round | 27/09/2008 | FC Wil 1900 | - | Servette FC | 0:1 | ||||
| 14. Round | 30/11/2008 | FC Biel/Bienne | - | FC Wil 1900 | 2:1 | ||||
| 15. Round | 07/12/2008 | FC Wil 1900 | - | FC Locarno | 2:3 | ||||
| 18. Round | 09/03/2009 | FC Wil 1900 | - | FC Lausanne-Sport | 2:0 | ||||
| 20. Round | 22/03/2009 | FC Wil 1900 | - | FC Schaffhausen | 2:1 | ||||
| 22. Round | 09/04/2009 | Servette FC | - | FC Wil 1900 | 1:1 |  |
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| 23. Round | 18/04/2009 | FC Wil 1900 | - | FC La Chaux-de-Fonds | 1:0 | ||||
| 24. Round | 22/04/2009 | FC Wil 1900 | - | FC Winterthur | 1:1 | ||||
| 25. Round | 26/04/2009 | FC Concordia Basel | - | FC Wil 1900 | 3:4 | ||||
| 26. Round | 03/05/2009 | FC Wil 1900 | - | FC St. Gallen | 1:1 | ||||
| 27. Round | 09/05/2009 | Yverdon Sport FC | - | FC Wil 1900 | 1:1 | ||||
| 28. Round | 16/05/2009 | FC Wil 1900 | - | FC Thun | 2:0 | ||||
| 29. Round | 23/05/2009 | FC Wil 1900 | - | FC Biel/Bienne | 3:0 | ||||
| 30. Round | 30/05/2009 | FC Locarno | - | FC Wil 1900 | 0:1 |
Switzerland