| 1. Round | 09/08/2024 | FC Zlín [Youth] | - | Vysočina Jihlava [Youth] | 3:1 |  |
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| 2. Round | 16/08/2024 | FK Mladá Boleslav [Youth] | - | FC Zlín [Youth] | 3:0 | ||||
| 3. Round | 23/08/2024 | FC Zlín [Youth] | - | FK Pardubice [Youth] | 3:1 | ||||
| 4. Round | 30/08/2024 | Slavia Praha [Youth] | - | FC Zlín [Youth] | 0:2 | |
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| 5. Round | 07/09/2024 | FC Zlín [Youth] | - | FK Jablonec [Youth] | 3:1 | |
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| 9. Round | 05/10/2024 | FC Zlín [Youth] | - | AC Sparta Praha [Youth] | 5:0 | |
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| 10. Round | 11/10/2024 | FC Zlín [Youth] | - | Sigma Olomouc [Youth] | 2:0 | |
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| 11. Round | 19/10/2024 | FC Zbrojovka Brno [Youth] | - | FC Zlín [Youth] | 1:1 | ||||
| 15. Round | 16/11/2024 | Viktoria Plzeň [Youth] | - | FC Zlín [Youth] | 3:2 | |
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| 7. Round | 23/11/2024 | FC Zlín [Youth] | - | SFC Opava [Youth] | 2:0 | |
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| 17. Round | 14/03/2025 | FC Zlín [Youth] | - | FK Mladá Boleslav [Youth] | 7:2 | |
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| 18. Round | 22/03/2025 | FK Pardubice [Youth] | - | FC Zlín [Youth] | 2:1 |
Czech Republic