| 18. Round | 15/03/2024 | FK Mladá Boleslav [Youth B] | - | FK Pardubice [Youth B] | 3:2 | ||||
| 20. Round | 28/03/2024 | FC Zbrojovka Brno [Youth B] | - | FK Pardubice [Youth B] | 2:3 |  |
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| 21. Round | 06/04/2024 | FK Pardubice [Youth B] | - | Slavia Praha [Youth B] | 2:3 | ||||
| 22. Round | 13/04/2024 | FK Frýdek-Místek [Youth B] | - | FK Pardubice [Youth B] | 2:3 |  |
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| 23. Round | 20/04/2024 | FK Pardubice [Youth B] | - | Banik Ostrava [Youth B] | 2:5 | ||||
| 24. Round | 27/04/2024 | MFK Karviná [Youth B] | - | FK Pardubice [Youth B] | 2:5 | |
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| 25. Round | 04/05/2024 | FK Pardubice [Youth B] | - | Viktoria Plzeň [Youth B] | 2:2 | ||||
| 26. Round | 11/05/2024 | 1. FC Slovácko [Youth B] | - | FK Pardubice [Youth B] | 0:6 | ||||
| 27. Round | 18/05/2024 | FK Pardubice [Youth B] | - | Sigma Olomouc [Youth B] | 0:2 | ||||
| 28. Round | 25/05/2024 | AC Sparta Praha [Youth B] | - | FK Pardubice [Youth B] | 1:2 | ||||
| 29. Round | 31/05/2024 | FC Zlín [Youth B] | - | FK Pardubice [Youth B] | 2:1 | ||||
| 30. Round | 08/06/2024 | FK Pardubice [Youth B] | - | Dynamo České Budějovice [Youth B] | 4:1 |
Czech Republic