| 1. Round | 15/02/2025 | V-Varen Nagasaki | - | Roasso Kumamoto | 3:2 | ||||
| 2. Round | 23/02/2025 | Renofa Yamaguchi | - | V-Varen Nagasaki | 2:2 | ||||
| 3. Round | 01/03/2025 | V-Varen Nagasaki | - | Júbilo Iwata | 1:0 | ||||
| 4. Round | 08/03/2025 | Vegalta Sendai | - | V-Varen Nagasaki | 1:1 | ||||
| 5. Round | 15/03/2025 | V-Varen Nagasaki | - | Tokushima Vortis | 1:0 | ||||
| 6. Round | 23/03/2025 | V-Varen Nagasaki | - | Blaublitz Akita | 5:1 |  |
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| 7. Round | 30/03/2025 | Fujieda MyFC | - | V-Varen Nagasaki | 3:2 | ||||
| 8. Round | 06/04/2025 | FC Imabari | - | V-Varen Nagasaki | 4:1 | |
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| 9. Round | 13/04/2025 | V-Varen Nagasaki | - | Sagan Tosu | 0:2 | ||||
| 10. Round | 19/04/2025 | Ventforet Kofu | - | V-Varen Nagasaki | 1:1 | ||||
| 11. Round | 25/04/2025 | V-Varen Nagasaki | - | Iwaki FC | 3:4 | ||||
| 12. Round | 29/04/2025 | Hokkaido Consadole Sapporo | - | V-Varen Nagasaki | 2:2 | ||||
| 13. Round | 03/05/2025 | V-Varen Nagasaki | - | Ehime FC | 1:1 | ||||
| 14. Round | 06/05/2025 | Kataller Toyama | - | V-Varen Nagasaki | 1:2 | ||||
| 15. Round | 11/05/2025 | V-Varen Nagasaki | - | Montedio Yamagata | 1:1 | ||||
| 16. Round | 18/05/2025 | Oita Trinita | - | V-Varen Nagasaki | 1:2 | ||||
| 17. Round | 25/05/2025 | V-Varen Nagasaki | - | JEF United Chiba | 1:0 |
Brazil