| 4. Round | 23/08/2024 | TJ Start Brno | - | FK Hodonín | 2:2 | ||||
| 5. Round | 31/08/2024 | FK Hodonín | - | FC Hlučín | 0:1 | ||||
| 6. Round | 08/09/2024 | MFK Karviná B | - | FK Hodonín | 1:2 | ||||
| 17. Round | 11/09/2024 | FK Hodonín | - | 1. SC Znojmo | 1:0 | ||||
| 8. Round | 22/09/2024 | FC Zbrojovka Brno B | - | FK Hodonín | 3:0 | ||||
| 9. Round | 28/09/2024 | FK Hodonín | - | FK Blansko | 2:2 | ||||
| 10. Round | 05/10/2024 | ČSK Uherský Brod | - | FK Hodonín | 2:2 |  |
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| 7. Round | 09/10/2024 | FK Hodonín | - | FC Zlín B | 4:2 | |
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| 11. Round | 12/10/2024 | FK Hodonín | - | FC Zlínsko | 2:2 | |
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| 12. Round | 20/10/2024 | SK Uničov | - | FK Hodonín | 0:0 | ||||
| 13. Round | 26/10/2024 | FK Hodonín | - | FC Strání | 0:0 | ||||
| 14. Round | 03/11/2024 | Hanácká Slávia Kroměříž | - | FK Hodonín | 3:2 | |
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| 15. Round | 09/11/2024 | FK Hodonín | - | TJ Unie Hlubina | 3:1 | |
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| 16. Round | 16/11/2024 | FK Třinec | - | FK Hodonín | 1:2 |
Czech Republic