| 3. Round | 12/08/2006 | Tescoma Zlín | - | FK SIAD Most | 2:1 | ||||
| 6. Round | 10/09/2006 | FK SIAD Most | - | Slavia Praha | 2:0 | ||||
| 9. Round | 01/10/2006 | 1. FC Brno | - | FK SIAD Most | 1:1 | ||||
| 10. Round | 15/10/2006 | FK SIAD Most | - | 1. FC Slovácko | 2:0 | ||||
| 12. Round | 29/10/2006 | Viktoria Plzeň | - | FK SIAD Most | 1:1 |  |
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| 14. Round | 13/11/2006 | FK Mladá Boleslav | - | FK SIAD Most | 2:1 | ||||
| 15. Round | 19/11/2006 | FK SIAD Most | - | AC Sparta Praha | 1:1 | ||||
| 17. Round | 03/12/2006 | FK SIAD Most | - | FK Jablonec 97 | 3:1 | |
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| 19. Round | 18/03/2007 | Dynamo České Budějovice | - | FK SIAD Most | 0:0 | |
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| 22. Round | 15/04/2007 | FK SIAD Most | - | Slovan Liberec | 0:0 | ||||
| 23. Round | 18/04/2007 | Baník Ostrava | - | FK SIAD Most | 1:0 | ||||
| 24. Round | 22/04/2007 | FK SIAD Most | - | 1. FC Brno | 4:2 | |
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| 25. Round | 28/04/2007 | 1. FC Slovácko | - | FK SIAD Most | 1:1 | ||||
| 26. Round | 06/05/2007 | FK SIAD Most | - | Sigma Olomouc | 1:1 | |
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| 29. Round | 21/05/2007 | FK SIAD Most | - | FK Mladá Boleslav | 1:1 | ||||
| 30. Round | 28/05/2007 | AC Sparta Praha | - | FK SIAD Most | 5:0 |
Slovakia