| 12. Round | 05/10/2019 | Baník Ostrava | - | FC Fastav Zlín | 4:0 | ||||
| 13. Round | 19/10/2019 | FC Fastav Zlín | - | FK Mladá Boleslav | 0:2 | ||||
| 14. Round | 26/10/2019 | 1. FK Příbram | - | FC Fastav Zlín | 0:0 | ||||
| 15. Round | 04/11/2019 | FC Fastav Zlín | - | Viktoria Plzeň | 1:1 | ||||
| 16. Round | 09/11/2019 | FC Fastav Zlín | - | Sigma Olomouc | 1:0 | ||||
| 17. Round | 23/11/2019 | Slovan Liberec | - | FC Fastav Zlín | 5:0 | ||||
| 18. Round | 30/11/2019 | FC Fastav Zlín | - | 1. FC Slovácko | 2:1 | ||||
| 19. Round | 07/12/2019 | FK Teplice | - | FC Fastav Zlín | 2:1 | ||||
| 20. Round | 14/12/2019 | FC Fastav Zlín | - | SFC Opava | 2:0 | ||||
| 21. Round | 15/02/2020 | MFK Karviná | - | FC Fastav Zlín | 2:0 | ||||
| 22. Round | 23/02/2020 | FC Fastav Zlín | - | Dynamo České Budějovice | 2:3 | ||||
| 23. Round | 29/02/2020 | AC Sparta Praha | - | FC Fastav Zlín | 2:2 | ||||
| 24. Round | 07/03/2020 | FC Fastav Zlín | - | Bohemians Praha 1905 | 2:3 | ||||
| 29. Round | 10/06/2020 | Viktoria Plzeň | - | FC Fastav Zlín | 3:0 |
Slovakia