| 1. Round | 02/08/1998 | Slavia Praha | - | FC Dukla Pribram | 2:0 | ||||
| 2. Round | 09/08/1998 | FC Dukla Pribram | - | FK Teplice | 2:3 | ||||
| 3. Round | 23/08/1998 | Chmel Blsany | - | FC Dukla Pribram | 1:0 |  |
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| 4. Round | 30/08/1998 | Sigma Olomouc | - | FC Dukla Pribram | 0:0 | ||||
| 5. Round | 13/09/1998 | FC Dukla Pribram | - | Baník Ostrava | 1:0 | ||||
| 7. Round | 28/09/1998 | FC Dukla Pribram | - | Viktoria Žižkov | 0:1 | ||||
| 9. Round | 18/10/1998 | FC Dukla Pribram | - | AC Sparta Praha | 0:0 | ||||
| 10. Round | 25/10/1998 | SK Hradec Králové | - | FC Dukla Pribram | 3:0 | |
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| 12. Round | 07/11/1998 | FC Karviná | - | FC Dukla Pribram | 2:0 | ||||
| 13. Round | 15/11/1998 | FC Dukla Pribram | - | FC Petra Drnovice | 0:2 | ||||
| 22. Round | 11/04/1999 | Viktoria Žižkov | - | FC Dukla Pribram | 1:1 | |
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| 24. Round | 25/04/1999 | AC Sparta Praha | - | FC Dukla Pribram | 3:0 | ||||
| 25. Round | 30/04/1999 | FC Dukla Pribram | - | SK Hradec Králové | 0:0 | ||||
| 26. Round | 09/05/1999 | Viktoria Plzeň | - | FC Dukla Pribram | 2:1 | ||||
| 27. Round | 12/05/1999 | FC Dukla Pribram | - | FC Karviná | 3:1 | ||||
| 29. Round | 22/05/1999 | FC Dukla Pribram | - | SFC Opava | 3:1 | |
Czech Republic