| 16. Round | 21/02/1999 | FK Jablonec 97 | - | FC Karviná | 1:1 | ||||
| 17. Round | 28/02/1999 | FC Petra Drnovice | - | FK Jablonec 97 | 1:1 |  |
 |
||
| 18. Round | 07/03/1999 | FK Jablonec 97 | - | SFC Opava | 1:0 | |
|||
| 20. Round | 08/04/1999 | FK Jablonec 97 | - | Slavia Praha | 5:2 | ||||
| 22. Round | 11/04/1999 | FK Jablonec 97 | - | Chmel Blsany | 1:0 | ||||
| 23. Round | 18/04/1999 | FC Dukla Pribram | - | FK Jablonec 97 | 1:1 | ||||
| 24. Round | 25/04/1999 | FK Jablonec 97 | - | Baník Ostrava | 2:2 | ||||
| 25. Round | 02/05/1999 | FC Boby-sport Brno | - | FK Jablonec 97 | 3:0 | |
|||
| 26. Round | 09/05/1999 | FK Jablonec 97 | - | Viktoria Žižkov | 0:1 | ||||
| 27. Round | 12/05/1999 | FK Jablonec 97 | - | Sigma Olomouc | 3:2 | ||||
| 28. Round | 16/05/1999 | AC Sparta Praha | - | FK Jablonec 97 | 2:0 | |
|||
| 29. Round | 22/05/1999 | FK Jablonec 97 | - | SK Hradec Králové | 1:2 | ||||
| 30. Round | 30/05/1999 | Viktoria Plzeň | - | FK Jablonec 97 | 2:3 |
Czech Republic