| 1. Round | 02/08/2008 | Tescoma Zlín | - | FK Baumit Jablonec | 0:1 | ||||
| 2. Round | 10/08/2008 | FK Mladá Boleslav | - | Tescoma Zlín | 1:0 |  |
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| 3. Round | 16/08/2008 | Tescoma Zlín | - | Viktoria Žižkov | 1:0 | ||||
| 6. Round | 13/09/2008 | Slovan Liberec | - | Tescoma Zlín | 2:1 | ||||
| 7. Round | 22/09/2008 | Tescoma Zlín | - | Slavia Praha | 0:3 |  |
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| 8. Round | 28/09/2008 | FK Teplice | - | Tescoma Zlín | 2:0 | ||||
| 9. Round | 04/10/2008 | Tescoma Zlín | - | Viktoria Plzeň | 2:0 |
Czech Republic