| 5. Round | 05/04/2025 | FK Mladá Boleslav [Youth C] | - | Slavia Praha [Youth C] | 1:5 | ||||
| 7. Round | 17/04/2025 | FK Mladá Boleslav [Youth C] | - | Dynamo České Budějovice [Youth C] | 1:2 |  |
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| 8. Round | 01/05/2025 | FK Mladá Boleslav [Youth C] | - | AC Sparta Praha [Youth C] | 1:2 | |
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| 9. Round | 03/05/2025 | FK Mladá Boleslav [Youth C] | - | FK Pardubice [Youth C] | 2:2 | |
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| 10. Round | 08/05/2025 | FC Hradec Králové [Youth C] | - | FK Mladá Boleslav [Youth C] | 3:4 | |
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| 11. Round | 17/05/2025 | FK Mladá Boleslav [Youth C] | - | Viktoria Plzeň [Youth C] | 6:2 | |
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| 12. Round | 24/05/2025 | Slavia Praha [Youth C] | - | FK Mladá Boleslav [Youth C] | 1:1 | ||||
| 13. Round | 31/05/2025 | FK Mladá Boleslav [Youth C] | - | FK Teplice [Youth C] | 2:1 | |
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| 14. Round | 07/06/2025 | Dynamo České Budějovice [Youth C] | - | FK Mladá Boleslav [Youth C] | 0:2 | |
Czech Republic