| 1. Round | 25/02/2024 | Roasso Kumamoto | - | Shimizu S-Pulse | 1:2 | ||||
| 2. Round | 02/03/2024 | Shimizu S-Pulse | - | Ehime FC | 2:0 | ||||
| 3. Round | 10/03/2024 | V-Varen Nagasaki | - | Shimizu S-Pulse | 4:1 |  |
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| 6. Round | 24/03/2024 | Shimizu S-Pulse | - | Blaublitz Akita | 1:0 | ||||
| 7. Round | 30/03/2024 | Montedio Yamagata | - | Shimizu S-Pulse | 2:0 | ||||
| 8. Round | 03/04/2024 | Shimizu S-Pulse | - | Tokushima Vortis | 1:1 | ||||
| 9. Round | 07/04/2024 | Ventforet Kofu | - | Shimizu S-Pulse | 0:1 | ||||
| 10. Round | 13/04/2024 | Iwaki FC | - | Shimizu S-Pulse | 2:3 | ||||
| 11. Round | 20/04/2024 | Shimizu S-Pulse | - | Vegalta Sendai | 3:2 |  |
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| 12. Round | 28/04/2024 | Fagiano Okayama | - | Shimizu S-Pulse | 0:1 | ||||
| 13. Round | 03/05/2024 | Shimizu S-Pulse | - | Tochigi SC | 4:1 | ||||
| 15. Round | 11/05/2024 | Shimizu S-Pulse | - | Kagoshima United | 4:0 | |
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| 25. Round | 03/08/2024 | Vegalta Sendai | - | Shimizu S-Pulse | 2:1 | ||||
| 26. Round | 10/08/2024 | Shimizu S-Pulse | - | Thespa Gunma | 4:0 | ||||
| 28. Round | 24/08/2024 | Kagoshima United | - | Shimizu S-Pulse | 0:1 | ||||
| 30. Round | 07/09/2024 | Shimizu S-Pulse | - | V-Varen Nagasaki | 1:1 |
Japan