| 2. Round | 09/07/2016 | FC Tokyo | - | Ventforet Kofu | 1:0 | ||||
| 6. Round | 30/07/2016 | Albirex Niigata | - | FC Tokyo | 0:1 | ||||
| 8. Round | 13/08/2016 | Vissel Kobe | - | FC Tokyo | 4:1 | ||||
| 9. Round | 20/08/2016 | FC Tokyo | - | Yokohama F. Marinos | 1:0 | ||||
| 13. Round | 25/09/2016 | Gamba Osaka | - | FC Tokyo | 3:3 | ||||
| 14. Round | 01/10/2016 | Sanfrecce Hiroshima | - | FC Tokyo | 0:1 | ||||
| 16. Round | 29/10/2016 | FC Tokyo | - | Vegalta Sendai | 1:0 |
Japan