| 16. Round | 15/03/2025 | FC Uster | - | FC Schaffhausen II | 3:4 |  |
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| 17. Round | 22/03/2025 | FC Schaffhausen II | - | FC Wil 1900 II | 1:0 | ||||
| 18. Round | 29/03/2025 | KF Dardania St. Gallen | - | FC Schaffhausen II | 2:1 | ||||
| 19. Round | 05/04/2025 | FC Schaffhausen II | - | FC Seefeld Zürich | 3:2 | |
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| 20. Round | 13/04/2025 | FC Altstätten | - | FC Schaffhausen II | 1:3 | |
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| 22. Round | 27/04/2025 | FC Widnau | - | FC Schaffhausen II | 0:3 | |
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| 23. Round | 30/04/2025 | FC Schaffhausen II | - | FC Bülach | 1:3 | ||||
| 24. Round | 03/05/2025 | FC Arbon 05 | - | FC Schaffhausen II | 2:7 | |
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| 25. Round | 09/05/2025 | Chur 97 | - | FC Schaffhausen II | 0:0 | ||||
| 26. Round | 17/05/2025 | FC Schaffhausen II | - | FC Gossau | 1:2 | ||||
| 27. Round | 24/05/2025 | FC Red Star Zürich | - | FC Schaffhausen II | 1:4 | |
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| 29. Round | 11/06/2025 | FC Balzers | - | FC Schaffhausen II | -:- | |
Germany