| 3. Round | 24/08/2024 | Sigma Olomouc [Youth B] | - | FK Mladá Boleslav [Youth B] | 1:2 | ||||
| 4. Round | 30/08/2024 | FK Mladá Boleslav [Youth B] | - | FC Zbrojovka Brno [Youth B] | 3:2 | ||||
| 7. Round | 21/09/2024 | FK Dukla Praha [Youth B] | - | FK Mladá Boleslav [Youth B] | 1:3 | ||||
| 9. Round | 05/10/2024 | Vysočina Jihlava [Youth B] | - | FK Mladá Boleslav [Youth B] | 2:0 |  |
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| 11. Round | 19/10/2024 | FK Mladá Boleslav [Youth B] | - | FK Pardubice [Youth B] | 3:1 | ||||
| 12. Round | 26/10/2024 | Slavia Praha [Youth B] | - | FK Mladá Boleslav [Youth B] | 3:1 | ||||
| 6. Round | 30/10/2024 | FK Mladá Boleslav [Youth B] | - | Dynamo České Budějovice [Youth B] | 1:2 | ||||
| 14. Round | 09/11/2024 | Slovan Liberec [Youth B] | - | FK Mladá Boleslav [Youth B] | 3:0 | ||||
| 15. Round | 16/11/2024 | FK Mladá Boleslav [Youth B] | - | SFC Opava [Youth B] | 7:4 | ||||
| 24. Round | 03/05/2025 | FK Mladá Boleslav [Youth B] | - | Vysočina Jihlava [Youth B] | 3:2 |
Czech Republic