| 17. Round | 01/03/2009 | FC Concordia Basel | - | FC Biel/Bienne | 1:1 | ||||
| 18. Round | 08/03/2009 | FC Locarno | - | FC Concordia Basel | 3:1 | ||||
| 20. Round | 23/03/2009 | FC Thun | - | FC Concordia Basel | 1:0 | ||||
| 16. Round | 27/03/2009 | Yverdon Sport FC | - | FC Concordia Basel | 1:1 | ||||
| 21. Round | 03/04/2009 | FC Concordia Basel | - | FC Gossau | 2:1 | ||||
| 22. Round | 11/04/2009 | FC Concordia Basel | - | FC Stade Nyonnais | 2:1 | ||||
| 23. Round | 20/04/2009 | FC Wohlen | - | FC Concordia Basel | 2:1 | ||||
| 24. Round | 23/04/2009 | FC La Chaux-de-Fonds | - | FC Concordia Basel | 2:1 | ||||
| 25. Round | 26/04/2009 | FC Concordia Basel | - | FC Wil 1900 | 3:4 |  |
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| 26. Round | 02/05/2009 | FC Lausanne-Sport | - | FC Concordia Basel | 2:3 | |
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| 27. Round | 11/05/2009 | FC Concordia Basel | - | FC Lugano | 2:3 | ||||
| 28. Round | 18/05/2009 | FC Concordia Basel | - | FC St. Gallen | 0:1 | ||||
| 29. Round | 23/05/2009 | FC Winterthur | - | FC Concordia Basel | 4:5 | |
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| 30. Round | 28/05/2009 | FC Concordia Basel | - | FC Schaffhausen | 3:0 | |
Switzerland