| 1. Round | 17/07/2016 | Dinamo Zagreb | - | Lokomotiva Zagreb | 3:1 | ||||
| 6. Round | 19/08/2016 | Dinamo Zagreb | - | RNK Split | 1:0 | ||||
| 8. Round | 10/09/2016 | Dinamo Zagreb | - | NK Osijek | 0:1 | ||||
| 9. Round | 18/09/2016 | HNK Rijeka | - | Dinamo Zagreb | 5:2 | ||||
| 10. Round | 23/09/2016 | Lokomotiva Zagreb | - | Dinamo Zagreb | 0:1 | ||||
| 11. Round | 02/10/2016 | Dinamo Zagreb | - | Hajduk Split | 0:0 | ||||
| 12. Round | 14/10/2016 | Slaven Belupo | - | Dinamo Zagreb | 0:1 | ||||
| 13. Round | 22/10/2016 | Dinamo Zagreb | - | HNK Cibalia | 3:0 | ||||
| 14. Round | 29/10/2016 | NK Inter Zaprešić | - | Dinamo Zagreb | 0:1 | ||||
| 15. Round | 06/11/2016 | RNK Split | - | Dinamo Zagreb | 0:1 | ||||
| 16. Round | 18/11/2016 | Dinamo Zagreb | - | NK Istra 1961 | 1:1 | ||||
| 18. Round | 03/12/2016 | Dinamo Zagreb | - | HNK Rijeka | 1:1 | ||||
| 22. Round | 26/02/2017 | HNK Cibalia | - | Dinamo Zagreb | 1:2 | ||||
| 32. Round | 04/05/2017 | NK Inter Zaprešić | - | Dinamo Zagreb | 0:3 | ||||
| 33. Round | 12/05/2017 | RNK Split | - | Dinamo Zagreb | 0:1 | ||||
| 35. Round | 21/05/2017 | NK Osijek | - | Dinamo Zagreb | 0:1 |  |
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| 36. Round | 27/05/2017 | Dinamo Zagreb | - | HNK Rijeka | 5:2 |
Portugal