| 1. Round | 29/07/2006 | Tescoma Zlín | - | 1. FC Slovácko | 1:2 | ||||
| 3. Round | 13/08/2006 | FK Teplice | - | 1. FC Slovácko | 3:2 | ||||
| 5. Round | 27/08/2006 | Dynamo České Budějovice | - | 1. FC Slovácko | 1:0 | ||||
| 6. Round | 10/09/2006 | 1. FC Slovácko | - | Slovan Liberec | 0:1 |  |
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| 7. Round | 17/09/2006 | Slavia Praha | - | 1. FC Slovácko | 0:0 | |
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| 8. Round | 23/09/2006 | 1. FC Slovácko | - | 1. FC Brno | 0:0 | ||||
| 9. Round | 01/10/2006 | Sigma Olomouc | - | 1. FC Slovácko | 2:1 |
Czech Republic