| 1. Round | 29/07/2006 | FK Mladá Boleslav | - | Sigma Olomouc | 2:1 | ||||
| 2. Round | 06/08/2006 | Sigma Olomouc | - | Dynamo České Budějovice | 0:0 | ||||
| 3. Round | 12/08/2006 | Baník Ostrava | - | Sigma Olomouc | 3:1 | ||||
| 4. Round | 19/08/2006 | Sigma Olomouc | - | Slovan Liberec | 0:1 | ||||
| 5. Round | 27/08/2006 | Slavia Praha | - | Sigma Olomouc | 3:0 |  |
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| 6. Round | 10/09/2006 | Viktoria Plzeň | - | Sigma Olomouc | 2:0 | ||||
| 7. Round | 17/09/2006 | Sigma Olomouc | - | 1. FC Brno | 1:0 | ||||
| 8. Round | 24/09/2006 | SK Kladno | - | Sigma Olomouc | 3:2 | ||||
| 9. Round | 01/10/2006 | Sigma Olomouc | - | 1. FC Slovácko | 2:1 | ||||
| 10. Round | 16/10/2006 | FK Jablonec 97 | - | Sigma Olomouc | 2:0 | |
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| 11. Round | 22/10/2006 | Sigma Olomouc | - | FK SIAD Most | 2:0 | ||||
| 12. Round | 29/10/2006 | FK Marila Příbram | - | Sigma Olomouc | 1:1 | ||||
| 13. Round | 05/11/2006 | Sigma Olomouc | - | FK Teplice | 1:1 | ||||
| 14. Round | 11/11/2006 | AC Sparta Praha | - | Sigma Olomouc | 1:0 | ||||
| 16. Round | 26/11/2006 | Dynamo České Budějovice | - | Sigma Olomouc | 2:0 | |
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| 17. Round | 03/12/2006 | Sigma Olomouc | - | FK Mladá Boleslav | 3:1 |
Czech Republic